Insertion junction: CLIP2.005530_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.005530
Chromosome:chromosome 7
Location:426627
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g315100 (1 of 2) 1.5.4.1 - Pyrimidodiazepine synthase outside_mRNA
lncRNA_TCONS_00046952 outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTTCGTGCCATCGGCCGTCAGACGCCGCGACAAGCCGCGCAGCCACTAA
Internal bar code:TTCGAATAGTTGATTCGGAAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1028
LEAP-Seq percent confirming:20.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:28
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:CCAGCACCTCTCTCCTCTCT
Suggested primer 2:GCAAGAATCAGCGCGAAGAG