Insertion junction: CLIP2.005553_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.005553
Chromosome:chromosome 3
Location:4760906
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g177700 NIT2 Transcription factor regulating nitrogen metabolism; (1 of 1) IPR001932//IPR003035 - PPM-type phosphatase domain // RWP-RK domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGGACGGGGCGTATGCGGCAGTGGTTGTTCACAAGGGTGGTGTCAAAAG
Internal bar code:TATACTTTTAAGTTTATTCCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:1295
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GCCACTTAGCTTGCGCATAC
Suggested primer 2:GGTGGTCTGTTGCTGCTTTG