| Common name: | NIT2 |
| Defline: | Transcription factor regulating nitrogen metabolism; (1 of 1) IPR001932//IPR003035 - PPM-type phosphatase domain // RWP-RK domain |
| Description: | Necessary for expression of the genes in the NIT1 nitrate assimilation cluster; contains an RWPxRK box (but RWPxRQ); cloned by transposon tagging; mRNA sequence: DQ311647; most 137c laboratory strains including CC-4532, CC-125 and CC-503 carry, in addition to the nit1-137 mutation, the nit2-137 C4763867->A nonsense mutation, leading to truncation of the gene model; other 137c strains carry other independently incurred mutations, in particular CC-124 which shows a transposon insertion into the first CDS exo |
| Synonyms: | g3674.t1 |
| Chromosome: | chromosome 3 |
We did not create a plasmid for this gene.
We did not determine any protein-protein interactions for this gene.
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.002622_1 | CLIP2.002622 | intron | 80 | 6.1 |
| CLIP2.002622_2 | CLIP2.002622 | intron | 80 | 6.1 |
| CLIP2.002772_1 | CLIP2.002772 | CDS | 80 | 6.1 |
| CLIP2.002772_2 | CLIP2.002772 | CDS | 80 | 6.1 |
| CLIP2.004622_1 | CLIP2.004622 | CDS | 80 | 6.1 |
| CLIP2.004622_2 | CLIP2.004622 | CDS | 80 | 6.1 |
| CLIP2.005553_1 | CLIP2.005553 | intron | 80 | 6.1 |
| CLIP2.005553_2 | CLIP2.005553 | intron | 80 | 6.1 |
| CLIP2.005978_1 | CLIP2.005978 | CDS | 80 | 6.1 |
| CLIP2.005978_2 | CLIP2.005978 | CDS | 80 | 6.1 |
| CLIP2.007720_1 | CLIP2.007720 | CDS | 63 | 6.1 |
| LMJ.RY0402.065278_1 | LMJ.RY0402.065278 | CDS | 95 | 5.5 |
| LMJ.RY0402.107881_1 | LMJ.RY0402.107881 | CDS | 58 | 5.5 |
| LMJ.RY0402.184756_1 | LMJ.RY0402.184756 | CDS | 73 | 5.5 |
| PFAM: | PF02042 |
| PANTHER: | PTHR32002 |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | AT1G20640.1 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | Plant regulator RWP-RK family protein |
| Phytozome Locus Page |
Our phenotype screens did not find statistically significant results for this gene.