Insertion junction: CLIP2.005559_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.005559
Chromosome:chromosome 12
Location:1771724
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g485800 FTSH1,FHL1 FtsH-like membrane ATPase/metalloprotease; (1 of 1) PTHR23076//PTHR23076:SF33 - METALLOPROTEASE M41 FTSH // ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGAAGGCTGACTGCAAGTCGGTACACGGGCGATGGCCCCTCGCCTAAC
Internal bar code:GTTGGATCTGCTCTTTACCAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1854
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:36
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:CTATGAGGCTGCGGAGACAG
Suggested primer 2:ATGGTTAGGTAGGCGGGAGT