Insertion junction: CLIP2.005570_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.005570
Chromosome:chromosome 3
Location:1451101
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g151150 3'UTR
Cre03.g151200 CGLD16 Conserved in the Green Lineage and Diatoms; (1 of 1) PTHR36343:SF1 - EXPRESSED PROTEIN 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCAACGCTGTAATCTCACAGCGCGTCTCGCAAGTCCAGGTCCGGATTGGT
Internal bar code:TTGACGCTACTCGCAAGAGGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2249
LEAP-Seq percent confirming:97.2973
LEAP-Seq n confirming:36
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:37

Suggested primers for confirmation by PCR

Suggested primer 1:ACGATAAGGCCACACGTGTT
Suggested primer 2:GTCGATAACTCCCTGAGCGG