Insertion junction: CLIP2.005644_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.005644
Chromosome:chromosome 3
Location:3397135
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g166650 CGLD3,HEL15 (1 of 1) PTHR24031:SF210 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 22; conserved protein with DEAD/DEAH box helicase domain and proline rich domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAAACCTCTGCACCCACATGACCTCATTTTTGCCTGGGCCCACATGCCG
Internal bar code:CAAACGCCATGTTTTCTACTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:3521
LEAP-Seq percent confirming:96.4286
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:CCGTGGTCATGTGTCCTTGA
Suggested primer 2:GCCCGTCTTCTTCAGCTTCT