Insertion junction: CLIP2.005731_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.005731
Chromosome:chromosome 2
Location:6229527
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g387000 CGL34 (1 of 4) PF11891 - Domain of unknown function (DUF3411) (DUF3411); Conserved in the Green Lineage 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTACGTAGGCAAGCGGGCCTCCAGAGGGCCTGCGAGAAGTCGTTGACGT
Internal bar code:CATTACGCAGCGTGTCGTCATA

Confirmation - LEAP-Seq

LEAP-Seq distance:652
LEAP-Seq percent confirming:48.8372
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:22
LEAP-Seq n unique pos:43

Suggested primers for confirmation by PCR

Suggested primer 1:GCGGCAAACGTGAGACTTTT
Suggested primer 2:ATTGCCCACGAATGCCTACA