Insertion junction: CLIP2.005811_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.005811
Chromosome:chromosome 17
Location:4502405
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g731350 SDR28 Short-chain dehydrogenase/reductase; (1 of 1) 1.1.1.184//1.1.1.189//1.1.1.197 - Carbonyl reductase (NADPH) / Xenobiotic ketone reductase // Prostaglandin-E(2) 9-reductase / Prostaglandin-E2 9-reductase // 15-hydroxyprostaglandin dehydrogenase (NADP(+)) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCCGCATGGCGCGCAGTTGAGCAAGGCAAGGCGGCCGTGGCCAAGATCA
Internal bar code:ATGGCGAATCGTCGAAGATACA

Confirmation - LEAP-Seq

LEAP-Seq distance:2517
LEAP-Seq percent confirming:88.4615
LEAP-Seq n confirming:46
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:52

Suggested primers for confirmation by PCR

Suggested primer 1:CGGTAAACGCGCACAATAGG
Suggested primer 2:GCATCGTTCCTCGTGCATTC