Insertion junction: CLIP2.005965_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.005965
Chromosome:chromosome 10
Location:2258884
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g433950 (1 of 2) PTHR33222:SF3 - PROTEIN CURVATURE THYLAKOID 1C, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATTCCATTGCTCCATTCCGCCCCCATGTCTGCACGTTCTTACAGTCAAC
Internal bar code:TGGCCATAGGACTTTCCATAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:3290
LEAP-Seq percent confirming:83.7209
LEAP-Seq n confirming:72
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:86

Suggested primers for confirmation by PCR

Suggested primer 1:ACGGGCCAAAAATTTACCGC
Suggested primer 2:AGATCCCCATCGTGAGTCCA