Insertion junction: CLIP2.005979_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.005979
Chromosome:chromosome 12
Location:4358316
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g519300 TEF9 (1 of 2) PF13301 - Protein of unknown function (DUF4079) (DUF4079); conserved expressed protein, possible chloroplast localization intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGAAAGCTAGGGCGTGGTTGCTGATGTGGCGATGTGGGGCGCAAGGGGC
Internal bar code:AGAGCCGGGCAATGTCCAGTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1128
LEAP-Seq percent confirming:93.1034
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:TCCATACATACGCTCGGCAC
Suggested primer 2:TGTAGACACACACGTCCACG