Insertion junction: CLIP2.006012_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.006012
Chromosome:chromosome 17
Location:4504202
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g731350 SDR28 Short-chain dehydrogenase/reductase; (1 of 1) 1.1.1.184//1.1.1.189//1.1.1.197 - Carbonyl reductase (NADPH) / Xenobiotic ketone reductase // Prostaglandin-E(2) 9-reductase / Prostaglandin-E2 9-reductase // 15-hydroxyprostaglandin dehydrogenase (NADP(+)) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGTATTGCATACGACTCTTGACGCAGCTGGCCGCAATGGCGGATGAGTT
Internal bar code:GGATAGCCTGTTAAGGACGGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:439
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:CGCGAGCATGTGTGTATGTG
Suggested primer 2:CCTATTGTGCGCGTTTACCG