Insertion junction: CLIP2.006121_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.006121
Chromosome:chromosome 13
Location:909674
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g567750 PRP18 Pre-mRNA splicing factor; (1 of 1) K12817 - pre-mRNA-splicing factor 18 (PRPF18, PRP18) 5'UTR
Cre13.g567800 PPP41,PP2A2 (1 of 1) K11584 - serine/threonine-protein phosphatase 2A regulatory subunit B' (PPP2R5); Protein phosphatase 2A regulatory B subunit 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAACTAGGCTCGCCACTGCCTTAGTTGGACTATACTGACCTACCACGTGC
Internal bar code:TGTTTTGCAGTAAGTACATTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2391
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:59
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:59

Suggested primers for confirmation by PCR

Suggested primer 1:CGCTTGATTTCCTTCTCGCG
Suggested primer 2:ATGAATCATGTTGGGGCCGT