Insertion junction: CLIP2.006307_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.006307
Chromosome:chromosome 6
Location:4826519
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g280050 ROC86,XRN1 (1 of 1) K12618 - 5'-3' exoribonuclease 1 (XRN1, SEP1, KEM1); 5' to 3' exoribonuclease CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGAATCGAACGCGTCGTCCGGCACCACCTCGCCCTTGCGCCGCTGCTCC
Internal bar code:GTATACATGTTGCAGAATCGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:3417
LEAP-Seq percent confirming:51.7857
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:27
LEAP-Seq n unique pos:56

Suggested primers for confirmation by PCR

Suggested primer 1:TCCTTGCTTGACTCCGTGTC
Suggested primer 2:AGCAGCCTGTGTGTAAGGAC