Gene: Cre06.g280050

Overview

Common name:ROC86,XRN1
Defline:(1 of 1) K12618 - 5'-3' exoribonuclease 1 (XRN1, SEP1, KEM1); 5' to 3' exoribonuclease
Description:Homologue of yeast 5'-3' exoribonucleases Xrn1p (cytoplasmic) and Rat1p (nuclear); probably organelle targeted; Matsuo et al.'s (2008) roc86 (rhythm of chloroplast 86) circadian bioluminescence rhythm mutant locus maps here [PMID: 18334618]
Synonyms:ROC86,XRN1,Cre06.g280050.t1.1,g6513.t1
Chromosome:chromosome 6

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.002443_1 CLIP2.002443 CDS 80 6.1
CLIP2.002443_2 CLIP2.002443 CDS 80 6.1
CLIP2.004962_1 CLIP2.004962 CDS 80 6.1
CLIP2.004962_2 CLIP2.004962 CDS 80 6.1
CLIP2.006307_1 CLIP2.006307 CDS 80 6.1
CLIP2.006307_2 CLIP2.006307 CDS 80 6.1
CLIP2.006538_1 CLIP2.006538 CDS 80 6.1
CLIP2.006538_2 CLIP2.006538 CDS 80 6.1
CLIP2.006684_1 CLIP2.006684 CDS 80 6.1
CLIP2.006684_2 CLIP2.006684 CDS 80 6.1
CLIP2.009398_3 CLIP2.009398 5'UTR 80 6.1
CLIP2.009398_4 CLIP2.009398 5'UTR 80 6.1
CLIP2.010786_3 CLIP2.010786 CDS 63 6.1
CLIP2.031249_3 CLIP2.031249 intron 80 6.1
CLIP2.076292_1 CLIP2.076292 3'UTR 80 6.1
CLIP2.076292_2 CLIP2.076292 3'UTR 80 6.1
LMJ.RY0402.100153_1 LMJ.RY0402.100153 CDS 95 5.5
LMJ.RY0402.100153_2 LMJ.RY0402.100153 CDS 95 5.5
LMJ.RY0402.105856_2 LMJ.RY0402.105856 intron 95 5.5
LMJ.RY0402.105856_3 LMJ.RY0402.105856 intron 95 5.5
LMJ.RY0402.117676_1 LMJ.RY0402.117676 intron 95 5.5
LMJ.RY0402.117676_2 LMJ.RY0402.117676 intron 95 5.5
LMJ.RY0402.143966_1 LMJ.RY0402.143966 intron 58 5.5

Gene Annotations

PFAM:PF03159
PANTHER: PTHR12341 PTHR12341:SF7
KEGG_ec:EC:2.7.11.1
KEGG_orthology:K12618
KOG:KOG2045
Gene ontology terms::GO:0003676, GO:0004527
Best arabidopsis TAIR name:AT1G54490.1
Best arabidopsis TAIR symbol:AIN1,ATXRN4,EIN5,XRN4
Best arabidopsis TAIR defline:exoribonuclease 4
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Photosynthesis or light sensitivity, screen 7 of 12 ( 76% confidence (FDR = 0.24))
Photosynthesis or light sensitivity, screen 8 of 12 ( 74% confidence (FDR = 0.26))
Photosynthesis or light sensitivity, screen 10 of 12 ( 98% confidence (FDR = 0.018))
Photosynthesis or light sensitivity, screen 11 of 12 ( 82% confidence (FDR = 0.18))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.