Insertion junction: CLIP2.009398_3

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.009398
Chromosome:chromosome 6
Location:4827587
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g280050 ROC86,XRN1 (1 of 1) K12618 - 5'-3' exoribonuclease 1 (XRN1, SEP1, KEM1); 5' to 3' exoribonuclease 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTACATAGTGGATCTGACTTGACTGTGTCAAACTTACTCTTCTGGAGCC
Internal bar code:GTCGAAGGATGCTTTGGGTATC

Confirmation - LEAP-Seq

LEAP-Seq distance:4433
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:65
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:65

Suggested primers for confirmation by PCR

Suggested primer 1:GACACGGAGTCAAGCAAGGA
Suggested primer 2:CAATGCTCATGAATGCGGGG