Insertion junction: CLIP2.006429_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.006429
Chromosome:chromosome 13
Location:2345576
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g579050 APC1 (1 of 4) IPR002020 - Citrate synthase; Chlamydomonas specific family protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTGGACTGAGAAGCACGCCATCGCCAAGGCGCCCACAAAGCCCAACACT
Internal bar code:AAATACGCATGTTTTCGAGGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1006
LEAP-Seq percent confirming:96.0
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:GCGACCGTGTTCAAGCTTTT
Suggested primer 2:TTGGCTAACAGGCTTGGAGG