| Insertion cassette: | CIB2 |
| Side of cassette: | 5' truncated? |
| Strand: | - |
| Strain: | CLIP2.006480 |
| Chromosome: | chromosome 6 |
| Location: | 5252456 |
| Confidence (%): | 80 |
| Locus systematic id | Locus common name | Defline | Feature |
|---|---|---|---|
| Cre06.g284200 | LHCBM9 | (1 of 6) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1); Light-harvesting Chlorophyll a/b binding protein of LHCII | 5'UTR |
| lncRNA_TCONS_00146666 | 5'UTR |
Insertion site details | |
| Expected flanking sequence (starting at cassette; orientation from cassette outwards): | TCCCACTAGCAAAGATGGCATTCGCTCTGGCCTCCTCCCGCAAGGCGCTG |
| Internal bar code: | GTTAGCGGCTAGTTTTCCATAA |
Confirmation - LEAP-Seq | |
| LEAP-Seq distance: | 1708 |
| LEAP-Seq percent confirming: | 86.747 |
| LEAP-Seq n confirming: | 72 |
| LEAP-Seq n nonconfirming: | 11 |
| LEAP-Seq n unique pos: | 83 |
Suggested primers for confirmation by PCR | |
| Suggested primer 1: | TTTCGCGTTCTTTCCGGAGA |
| Suggested primer 2: | CAGCACAGTTGTCAACAGCC |