Insertion junction: CLIP2.006604_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.006604
Chromosome:chromosome 13
Location:2301464
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g578750 TBA1 (1 of 1) K00207 - dihydropyrimidine dehydrogenase (NADP+) (DPYD); Translation factor for chloroplast psbA mRNA CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTTCTTCATGACCTGGTAGTTGGTGCCGGGCGGGCCGCTGCCGATGATG
Internal bar code:TTACCGGATCCCCATAGCTCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1312
LEAP-Seq percent confirming:14.5833
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:41
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:ACGCTCTTTCTCGCACTCAA
Suggested primer 2:GGAGTAGTCGCGGATCTTGG