Insertion junction: CLIP2.006648_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.006648
Chromosome:chromosome 12
Location:3100493
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g500950 CLPP4 (1 of 3) PTHR10381//PTHR10381:SF24 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT // SUBFAMILY NOT NAMED; active subunit of the chloroplast ClpP complex 3'UTR
Cre12.g501000 PPT1,TPT22,TPT20 Putative UDP-GlcA transporter; (1 of 4) PTHR11132//PTHR11132:SF97 - SOLUTE CARRIER FAMILY 35 // SUBFAMILY NOT NAMED 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTCTCGCGTGACTATTTTTGGTAATTGCACGCTGATCCCGCCAATTGAG
Internal bar code:CTAAACCGTGTGTTCACAGCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1482
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:GTCTCCTGGTCCTAGGCTGA
Suggested primer 2:AGGAATTGGAAGGCATGGCA