Insertion junction: CLIP2.006772_4

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.006772
Chromosome:chromosome 17
Location:1747648
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g708700 HTR20,HTR27 Histone H3; (1 of 35) K11253 - histone H3 (H3) gene_edge/mRNA_edge/5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCTTCAAATTTCTTCTGTAAACTTCCAACAAAATGGCCCGCACCAAGCA
Internal bar code:TCTGATAAATCATGTACGTGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2027
LEAP-Seq percent confirming:89.4737
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:GCCCCATCCCAACCCATTAA
Suggested primer 2:CGGATAGCGGGCTTGGTAAT