Insertion junction: CLIP2.006936_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.006936
Chromosome:chromosome 17
Location:422211
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre17.g698750 RAA12,OPR104 psaA mRNA trans-splicing factor of subcomplex I; (1 of 781) IPR000104 - Antifreeze protein, type I 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGTAAGGCCGCGTTGTTCTCATACAGGCAACGCCATCAACTGCACAAGA
Internal bar code:CTTACGATGAAATAGATTGGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:453
LEAP-Seq percent confirming:90.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:ATTGTGAACGGTGTGCGTTG
Suggested primer 2:AGCTTGTGGAGTTGATGGGG