Insertion junction: CLIP2.007017_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.007017
Chromosome:chromosome 9
Location:2351218
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g394150 RAA1,OPR40 psaA mRNA trans-splicing factor; (1 of 3) PF06743 - FAST kinase-like protein, subdomain 1 (FAST_1) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCTCGTGTTCACCCACACGTCAACACGACGAGGTGCGCGGCCGCTGTCC
Internal bar code:CTAGGTGGGGAAGGGTCCGCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1044
LEAP-Seq percent confirming:81.8182
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CTTTCGCTCAGGTGTCGAGT
Suggested primer 2:TGGACCCAAACCATGTAGCC