| Common name: | RAA1,OPR40 |
| Defline: | psaA mRNA trans-splicing factor; (1 of 3) PF06743 - FAST kinase-like protein, subdomain 1 (FAST_1) |
| Description: | OctotricoPeptide (octotricoPeptide) Repeat (OPR) Protein; necessary for trans-splicing of psaA mRNA; component psaA trans-splicing sub complexes I and II |
| Synonyms: | OPR40,g9405.t1 |
| Chromosome: | chromosome 9 |
We did not create a plasmid for this gene.
We did not determine any protein-protein interactions for this gene.
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.002050_1 | CLIP2.002050 | intron | 80 | 6.1 |
| CLIP2.002050_2 | CLIP2.002050 | intron | 80 | 6.1 |
| CLIP2.002422_1 | CLIP2.002422 | CDS | 80 | 6.1 |
| CLIP2.003657_1 | CLIP2.003657 | intron | 80 | 6.1 |
| CLIP2.007017_1 | CLIP2.007017 | intron | 80 | 6.1 |
| CLIP2.007017_2 | CLIP2.007017 | intron | 80 | 6.1 |
| LMJ.RY0402.154772_1 | LMJ.RY0402.154772 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.154772_2 | LMJ.RY0402.154772 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.217292_1 | LMJ.RY0402.217292 | CDS | 73 | 5.5 |
| LMJ.RY0402.229225_1 | LMJ.RY0402.229225 | CDS | 95 | 5.5 |
| LMJ.RY0402.229225_2 | LMJ.RY0402.229225 | CDS | 95 | 5.5 |
| LMJ.RY0402.243435_1 | LMJ.RY0402.243435 | intron | 73 | 5.5 |
| LMJ.RY0402.245355_2 | LMJ.RY0402.245355 | CDS | 73 | 5.5 |
| LMJ.RY0402.255415_1 | LMJ.RY0402.255415 | intron | 73 | 5.5 |
| LMJ.RY0402.257212_1 | LMJ.RY0402.257212 | 3'UTR | 73 | 5.5 |
| PFAM: | PF06743 |
| PANTHER: | PTHR21228 |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | GO:0004672 |
| Best arabidopsis TAIR name: | |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | |
| Phytozome Locus Page |
Mutants in this gene exhibit a phenotype under the following conditions:
| Photosynthesis, screen 1 of 5 ( 78% confidence (FDR = 0.22)) |
| Photosynthesis, screen 3 of 5 ( 99% confidence (FDR = 0.0018)) |
| Photosynthesis, screen 5 of 5 ( 95% confidence (FDR = 0.049)) |
| Photosynthesis or light sensitivity, screen 1 of 12 ( 71% confidence (FDR = 0.29)) |
| Photosynthesis or light sensitivity, screen 2 of 12 ( 98% confidence (FDR = 0.015)) |
| Photosynthesis or light sensitivity, screen 3 of 12 ( 96% confidence (FDR = 0.033)) |
| Photosynthesis or light sensitivity, screen 4 of 12 ( 99% confidence (FDR = 0.0048)) |
| Photosynthesis or light sensitivity, screen 5 of 12 ( 98% confidence (FDR = 0.016)) |
| Photosynthesis or light sensitivity, screen 6 of 12 ( 99% confidence (FDR = 0.0047)) |
| Photosynthesis or light sensitivity, screen 7 of 12 ( 99% confidence (FDR = 0.009)) |
| Photosynthesis or light sensitivity, screen 8 of 12 ( 99% confidence (FDR = 0.001)) |
| Photosynthesis or light sensitivity, screen 9 of 12 ( 98% confidence (FDR = 0.017)) |
| Photosynthesis or light sensitivity, screen 10 of 12 ( 99% confidence (FDR = 0.0031)) |
| Photosynthesis or light sensitivity, screen 11 of 12 ( 99% confidence (FDR = 0.0032)) |
| Photosynthesis or light sensitivity, screen 12 of 12 ( 99% confidence (FDR = 0.0053)) |
Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.
If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.