Insertion junction: CLIP2.007070_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.007070
Chromosome:chromosome 3
Location:4426147
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g175250 SQS,SQS1 Squalene synthase; (1 of 1) 2.5.1.21 - Squalene synthase / Squalene synthetase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCTGGCTGGTGCGGGGCTTCTATAGCTCAGTAGGTAGAGCGTGCGGCTG
Internal bar code:TAGGAAGGGTGTCGCATCGTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:745
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:ATGCAGCTGGTGGGTAAGAC
Suggested primer 2:GTCAAGGCAGGTGGTATGCT