Insertion junction: CLIP2.007224_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.007224
Chromosome:chromosome 6
Location:8039116
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g305000 Conserved WD40-repeat Protein; (1 of 1) PTHR22850//PTHR22850:SF87 - WD40 REPEAT FAMILY // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGACATGTGGATGTGGGTTTGTGGAGTTGACTACGGTGCTACGCTACTTT
Internal bar code:TCTAGATGAACATGACGTGGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1169
LEAP-Seq percent confirming:60.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:GACGTTGGTGAACACTGTGC
Suggested primer 2:TGCTACATGTGTCTGCGTGT