Insertion junction: CLIP2.007368_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.007368
Chromosome:chromosome 17
Location:421059
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g698750 RAA12,OPR104 psaA mRNA trans-splicing factor of subcomplex I; (1 of 781) IPR000104 - Antifreeze protein, type I intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCCCAAGCCCGCCCGACTACCTATGGTGATGTAACACAGCTCGCGTAT
Internal bar code:TGCGGCTCCCCCCGACCCGCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:191
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:GCCGCTATCACTCTTTCCGA
Suggested primer 2:CCCCATCAACTCCACAAGCT