Insertion junction: CLIP2.009971_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.009971
Chromosome:chromosome 13
Location:2174682
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre13.g577950 VPS60 Subunit of the ESCRT-III complex; (1 of 1) K12198 - charged multivesicular body protein 5 (CHMP5, VPS60) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATGGCTGAACGTACAGCGTGTGACTGCTGGGACTGGATGGCAGCTATCG
Internal bar code:AGAGTAGAGGAAGTATTTTGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1352
LEAP-Seq percent confirming:15.942
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:58
LEAP-Seq n unique pos:69

Suggested primers for confirmation by PCR

Suggested primer 1:GTCGCTCCTCAAACCCAGAA
Suggested primer 2:ACACACAGACATACACGCGT