Gene: Cre13.g577950

Overview

Common name:VPS60
Defline:Subunit of the ESCRT-III complex; (1 of 1) K12198 - charged multivesicular body protein 5 (CHMP5, VPS60)
Description:Expressed Protein. Similar to VPS60, a SNF7-domain protein, component of the ESCRT-III complex involved in the ubiquitin-mediated internalization into the multi-vesicular bodies (late endosomes)
Synonyms:Cre13.g577950.t1.1,g14200.t1,VPS60
Chromosome:chromosome 13

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.009971_3 CLIP2.009971 intron 40 6.1
CLIP2.016142_1 CLIP2.016142 CDS 80 6.1
CLIP2.016142_2 CLIP2.016142 CDS 80 6.1
CLIP2.026089_1 CLIP2.026089 5'UTR 80 6.1
CLIP2.026089_2 CLIP2.026089 5'UTR 80 6.1
CLIP2.032380_1 CLIP2.032380 CDS 80 6.1
CLIP2.032380_2 CLIP2.032380 CDS 80 6.1
CLIP2.036886_1 CLIP2.036886 CDS 80 6.1
CLIP2.036886_2 CLIP2.036886 CDS 80 6.1
CLIP2.043506_3 CLIP2.043506 intron 63 6.1
CLIP2.043656_1 CLIP2.043656 CDS 80 6.1
CLIP2.043656_2 CLIP2.043656 CDS 80 6.1
CLIP2.050358_1 CLIP2.050358 CDS 80 6.1
CLIP2.050358_2 CLIP2.050358 CDS 80 6.1
CLIP2.059058_2 CLIP2.059058 intron 63 6.1
CLIP2.072168_2 CLIP2.072168 intron 80 6.1
CLIP2.076522_1 CLIP2.076522 3'UTR 80 6.1
CLIP2.078803_2 CLIP2.078803 intron 80 6.1
LMJ.RY0402.052577_1 LMJ.RY0402.052577 5'UTR 95 5.5
LMJ.RY0402.052577_2 LMJ.RY0402.052577 5'UTR 95 5.5
LMJ.RY0402.063068_1 LMJ.RY0402.063068 3'UTR 95 5.5
LMJ.RY0402.063068_2 LMJ.RY0402.063068 3'UTR 95 5.5
LMJ.RY0402.120047_1 LMJ.RY0402.120047 intron 73 5.5
LMJ.RY0402.120047_2 LMJ.RY0402.120047 intron 73 5.5
LMJ.RY0402.129258_1 LMJ.RY0402.129258 CDS 95 5.5
LMJ.RY0402.129258_2 LMJ.RY0402.129258 CDS 95 5.5
LMJ.RY0402.134718_2 LMJ.RY0402.134718 5'UTR 95 5.5
LMJ.RY0402.147192_1 LMJ.RY0402.147192 intron 73 5.5
LMJ.RY0402.152421_1 LMJ.RY0402.152421 intron 95 5.5
LMJ.RY0402.152421_2 LMJ.RY0402.152421 intron 95 5.5
LMJ.RY0402.160721_1 LMJ.RY0402.160721 intron 95 5.5
LMJ.RY0402.160721_2 LMJ.RY0402.160721 CDS 95 5.5
LMJ.RY0402.176819_1 LMJ.RY0402.176819 5'UTR 95 5.5
LMJ.RY0402.176819_2 LMJ.RY0402.176819 5'UTR 95 5.5
LMJ.RY0402.231268_1 LMJ.RY0402.231268 intron 95 5.5
LMJ.RY0402.231268_2 LMJ.RY0402.231268 intron 95 5.5
LMJ.RY0402.238111_1 LMJ.RY0402.238111 intron 73 5.5
LMJ.RY0402.242861_1 LMJ.RY0402.242861 intron 73 5.5
LMJ.RY0402.243894_3 LMJ.RY0402.243894 5'UTR 73 5.5
LMJ.RY0402.245611_1 LMJ.RY0402.245611 intron 73 5.5
LMJ.RY0402.245611_2 LMJ.RY0402.245611 intron 73 5.5
LMJ.RY0402.247514_1 LMJ.RY0402.247514 intron 95 5.5
LMJ.RY0402.247514_2 LMJ.RY0402.247514 intron 95 5.5
LMJ.RY0402.250543_3 LMJ.RY0402.250543 intron 73 5.5

Gene Annotations

PFAM:PF03357
PANTHER: PTHR22761 PTHR22761:SF17
KEGG_ec:
KEGG_orthology:K12198
KOG:KOG1655
Gene ontology terms::GO:0007034
Best arabidopsis TAIR name:AT3G10640
Best arabidopsis TAIR symbol:VPS60.1
Best arabidopsis TAIR defline:SNF7 family protein
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Low iron media, screen 1 of 1 ( 99% confidence (FDR = 0.009))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.