Insertion junction: CLIP2.010082_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.010082
Chromosome:chromosome 1
Location:793522
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g004350 ROC105,ROC77,ALIX,NAT3,HLM1 (1 of 1) K12200 - programmed cell death 6-interacting protein (PDCD6IP, ALIX, RIM20); Histone-lysine N-methyltransferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCAACTGGGTGGCTGCGTGCAACATCCGGCAAACAACAGCCGCGCGAA
Internal bar code:TGCTTATGATGTTAAAAGCCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2603
LEAP-Seq percent confirming:97.0149
LEAP-Seq n confirming:65
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:67

Suggested primers for confirmation by PCR

Suggested primer 1:CCCTCCATGGCTCCAACAAT
Suggested primer 2:TGTCATCCGTCGTGTTGAGG