Insertion junction: CLIP2.010592_3

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.010592
Chromosome:chromosome 12
Location:1202779
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g490300 MSD4 (1 of 5) K04564 - superoxide dismutase, Fe-Mn family (SOD2); Mn superoxide dismutase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACCTATTTGGGACTCGGCCGCTCGGACCACAGGGACCCCGCCGTGCCAC
Internal bar code:TTATAGTTATCATAGTTAGACG

Confirmation - LEAP-Seq

LEAP-Seq distance:347
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CCTACACCCACGTACACACC
Suggested primer 2:ATTTGGTCCAGCGTACGTGT