Insertion junction: CLIP2.010921_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.010921
Chromosome:chromosome 2
Location:824043
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g078750 PUS3 RNA pseudouridine synthase; (1 of 1) K15452 - tRNA pseudouridine synthase 2 [EC:5.4.99.-] (PUS2) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGTAACTTTAACCGCGTGTGTGTCTGTGTGTGTGTAAGTTCTTCGGTGC
Internal bar code:GGTTGTGGAAGTTATCGAGTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:253
LEAP-Seq percent confirming:10.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:CAGTCTTGTGAGTGCCGTCT
Suggested primer 2:AAAGGAGCTCCCGTCCCTAT