Insertion junction: CLIP2.011237_4

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.011237
Chromosome:chromosome 17
Location:3980643
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g728250 (1 of 1) PF16908//PF16910 - Vacuolar sorting-associated protein 13, N-terminal (VPS13) // Repeating coiled region of VPS13 (VPS13_mid_rpt) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGCAGCTACAGCCGCAGCCCCAGGCGGCGGCGGTGGCAGTAGCGCAGCT
Internal bar code:ATTAGGGCAAATAGTCTGGAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:2630
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:TCATGGCAGATGGGTTGCAT
Suggested primer 2:CAGTCCCTGTTCTGTCCCAC