Gene: Cre17.g728250

Overview

Common name:
Defline:(1 of 1) PF16908//PF16910 - Vacuolar sorting-associated protein 13, N-terminal (VPS13) // Repeating coiled region of VPS13 (VPS13_mid_rpt)
Description:
Synonyms:g17603.t1
Chromosome:chromosome 17

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.011237_3 CLIP2.011237 CDS 80 6.1
CLIP2.011237_4 CLIP2.011237 CDS 80 6.1
CLIP2.014034_3 CLIP2.014034 intron 80 6.1
CLIP2.014034_4 CLIP2.014034 intron 80 6.1
CLIP2.015640_1 CLIP2.015640 CDS 80 6.1
CLIP2.015640_2 CLIP2.015640 CDS 80 6.1
CLIP2.018806_1 CLIP2.018806 CDS 80 6.1
CLIP2.018806_2 CLIP2.018806 CDS 80 6.1
CLIP2.022626_1 CLIP2.022626 CDS 80 6.1
CLIP2.032451_1 CLIP2.032451 CDS 80 6.1
CLIP2.032451_2 CLIP2.032451 CDS 80 6.1
CLIP2.043501_1 CLIP2.043501 CDS 80 6.1
CLIP2.043501_2 CLIP2.043501 CDS 80 6.1
CLIP2.047009_2 CLIP2.047009 CDS 80 6.1
CLIP2.071138_2 CLIP2.071138 CDS 80 6.1
CLIP2.071138_3 CLIP2.071138 CDS 80 6.1
LMJ.RY0402.038874_2 LMJ.RY0402.038874 intron 73 5.5
LMJ.RY0402.054614_1 LMJ.RY0402.054614 CDS 95 5.5
LMJ.RY0402.054614_2 LMJ.RY0402.054614 CDS 95 5.5
LMJ.RY0402.066070_1 LMJ.RY0402.066070 3'UTR 73 5.5
LMJ.RY0402.083959_2 LMJ.RY0402.083959 intron 58 5.5
LMJ.RY0402.088624_1 LMJ.RY0402.088624 CDS 95 5.5
LMJ.RY0402.088624_2 LMJ.RY0402.088624 CDS 95 5.5
LMJ.RY0402.105098_2 LMJ.RY0402.105098 3'UTR 95 5.5
LMJ.RY0402.108908_1 LMJ.RY0402.108908 5'UTR 73 5.5
LMJ.RY0402.118531_2 LMJ.RY0402.118531 CDS 73 5.5
LMJ.RY0402.139324_2 LMJ.RY0402.139324 CDS 73 5.5
LMJ.RY0402.140678_1 LMJ.RY0402.140678 CDS 95 5.5
LMJ.RY0402.140678_2 LMJ.RY0402.140678 CDS 95 5.5
LMJ.RY0402.171618_1 LMJ.RY0402.171618 intron 95 5.5
LMJ.RY0402.171618_2 LMJ.RY0402.171618 intron 95 5.5
LMJ.RY0402.181342_3 LMJ.RY0402.181342 intron 73 5.5
LMJ.RY0402.182280_1 LMJ.RY0402.182280 intron 95 5.5
LMJ.RY0402.182280_2 LMJ.RY0402.182280 intron 95 5.5
LMJ.RY0402.194647_1 LMJ.RY0402.194647 CDS 73 5.5
LMJ.RY0402.200004_1 LMJ.RY0402.200004 CDS 73 5.5
LMJ.RY0402.205841_1 LMJ.RY0402.205841 CDS 95 5.5
LMJ.RY0402.205841_2 LMJ.RY0402.205841 intron 95 5.5
LMJ.RY0402.214556_1 LMJ.RY0402.214556 CDS 73 5.5

Gene Annotations

PFAM:PF16908, PF16910
PANTHER: PTHR16166 PTHR16166:SF93
KEGG_ec:
KEGG_orthology:
KOG:
Gene ontology terms::GO:0016021
Best arabidopsis TAIR name:AT4G17140
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:pleckstrin homology (PH) domain-containing protein
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Paromomycin, screen 3 of 6 ( 80% confidence (FDR = 0.2))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.