Insertion junction: CLIP2.071138_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.071138
Chromosome:chromosome 17
Location:3975232
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g728250 (1 of 1) PF16908//PF16910 - Vacuolar sorting-associated protein 13, N-terminal (VPS13) // Repeating coiled region of VPS13 (VPS13_mid_rpt) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTGCGTAGTGGTCGGCGCCTACACGCCGCCGCCGGCCGTGTCCGTGTTG
Internal bar code:GGCTAGACCTTTGGGTCTTTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1995
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:ATGTAGCACACCGGAAGCAA
Suggested primer 2:CATTTGCCACCACATGAGCC