Insertion junction: CLIP2.043501_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.043501
Chromosome:chromosome 17
Location:3980202
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g728250 (1 of 1) PF16908//PF16910 - Vacuolar sorting-associated protein 13, N-terminal (VPS13) // Repeating coiled region of VPS13 (VPS13_mid_rpt) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGGTATGCCCGCGTGCGCGTGCGCGTGCGTGTGTGCGTGCGGGGGTTAG
Internal bar code:GTGTGCTTAAACTCGCCTACGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1270
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:ACGGAAGTCAAGAGGCTGTG
Suggested primer 2:CCTGCTTGACGTGTTGTTGG