Insertion junction: CLIP2.012533_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.012533
Chromosome:chromosome 10
Location:2958175
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g440200 SMC5B (1 of 2) PTHR19306:SF1 - STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5; Structural Maintenance of Chromosomes protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACATGACAAGGCGGCACACGATGTCAGCGCCACCCCCCAAACCACACCGT
Internal bar code:GTGGCGTCTGGGAACCACAGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:139
LEAP-Seq percent confirming:8.33333
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GTAGTGTGCCTCTGTGTGCT
Suggested primer 2:GTATTCTACCCCCAAGCCGG