Gene: Cre10.g440200

Overview

Common name:SMC5B
Defline:(1 of 2) PTHR19306:SF1 - STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5; Structural Maintenance of Chromosomes protein
Description:Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation. This is one of two SMC5 genes near each other on scaffold 10.
Synonyms:SMC5B,g10836.t1
Chromosome:chromosome 10

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.012533_1 CLIP2.012533 intron 80 6.1
CLIP2.012533_2 CLIP2.012533 intron 80 6.1
CLIP2.014394_1 CLIP2.014394 outside_mRNA 80 6.1
CLIP2.014394_2 CLIP2.014394 outside_mRNA 80 6.1
CLIP2.019556_1 CLIP2.019556 CDS 80 6.1
CLIP2.019556_2 CLIP2.019556 CDS 80 6.1
CLIP2.026471_1 CLIP2.026471 outside_mRNA 80 6.1
CLIP2.026471_2 CLIP2.026471 outside_mRNA 80 6.1
CLIP2.032192_1 CLIP2.032192 CDS 80 6.1
CLIP2.032192_2 CLIP2.032192 CDS 80 6.1
CLIP2.034440_1 CLIP2.034440 CDS 80 6.1
CLIP2.034440_2 CLIP2.034440 CDS 80 6.1
CLIP2.039353_1 CLIP2.039353 outside_mRNA 80 6.1
CLIP2.039353_2 CLIP2.039353 outside_mRNA 80 6.1
CLIP2.045659_1 CLIP2.045659 outside_mRNA 80 6.1
CLIP2.045659_2 CLIP2.045659 outside_mRNA 80 6.1
CLIP2.053955_1 CLIP2.053955 CDS 80 6.1
CLIP2.053955_2 CLIP2.053955 CDS 80 6.1
CLIP2.072767_2 CLIP2.072767 outside_mRNA 80 6.1
CLIP2.072767_3 CLIP2.072767 outside_mRNA 80 6.1
LMJ.RY0402.062144_2 LMJ.RY0402.062144 CDS 95 5.5
LMJ.RY0402.062144_3 LMJ.RY0402.062144 CDS 95 5.5
LMJ.RY0402.070786_1 LMJ.RY0402.070786 5'UTR 73 5.5
LMJ.RY0402.099035_2 LMJ.RY0402.099035 intron 73 5.5
LMJ.RY0402.107351_1 LMJ.RY0402.107351 CDS 95 5.5
LMJ.RY0402.107351_2 LMJ.RY0402.107351 CDS 95 5.5
LMJ.RY0402.132069_1 LMJ.RY0402.132069 intron 95 5.5
LMJ.RY0402.139868_3 LMJ.RY0402.139868 intron 73 5.5
LMJ.RY0402.152644_1 LMJ.RY0402.152644 intron 95 5.5
LMJ.RY0402.152644_2 LMJ.RY0402.152644 CDS 95 5.5
LMJ.RY0402.159494_1 LMJ.RY0402.159494 CDS 58 5.5
LMJ.RY0402.192977_1 LMJ.RY0402.192977 CDS 95 5.5
LMJ.RY0402.192977_2 LMJ.RY0402.192977 CDS 95 5.5
LMJ.RY0402.196777_1 LMJ.RY0402.196777 CDS 95 5.5
LMJ.RY0402.196777_2 LMJ.RY0402.196777 CDS 95 5.5
LMJ.RY0402.219982_1 LMJ.RY0402.219982 3'UTR 73 5.5
LMJ.RY0402.237685_2 LMJ.RY0402.237685 CDS 73 5.5
LMJ.SG0182.009096_1 LMJ.SG0182.009096 CDS 75 5.3
LMJ.SG0182.019236_1 LMJ.SG0182.019236 intron 75 5.3

Gene Annotations

PFAM:PF02463
PANTHER: PTHR19306 PTHR19306:SF1
KEGG_ec:
KEGG_orthology:
KOG:KOG0979
Gene ontology terms::GO:0000724, GO:0006281, GO:0030915
Best arabidopsis TAIR name:AT5G15920
Best arabidopsis TAIR symbol:SMC5
Best arabidopsis TAIR defline:structural maintenance of chromosomes 5
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

LAT003D02, screen 1 of 1 ( 73% confidence (FDR = 0.27))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.