CLiP

Gene: Cre10.g440200 (Genome version: v5.5)

Overview

Common name:	SMC5B
Defline:	Structural Maintenance of Chromosomes protein
Description:	Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation. This is one of two SMC5 models near each other on scaffold 10.
Synonyms:	g10836.t1,SMC5B
Chromosome:	chromosome_10

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Orientation	Insertion Junction Feature	Confidence (%)
LMJ.RY0402.062144_2	LMJ.RY0402.062144	antisense	CDS	95
LMJ.RY0402.062144_3	LMJ.RY0402.062144	antisense	CDS	95
LMJ.RY0402.070786_1	LMJ.RY0402.070786	antisense	5'UTR	73
LMJ.RY0402.099035_2	LMJ.RY0402.099035	antisense	intron	73
LMJ.RY0402.107351_1	LMJ.RY0402.107351	antisense	CDS	95
LMJ.RY0402.107351_2	LMJ.RY0402.107351	antisense	CDS	95
LMJ.RY0402.132069_1	LMJ.RY0402.132069	antisense	intron	95
LMJ.RY0402.139868_3	LMJ.RY0402.139868	antisense	intron	73
LMJ.RY0402.152644_1	LMJ.RY0402.152644	antisense	intron	95
LMJ.RY0402.152644_2	LMJ.RY0402.152644	antisense	CDS	95
LMJ.RY0402.159494_1	LMJ.RY0402.159494	sense	CDS	58
LMJ.RY0402.192977_1	LMJ.RY0402.192977	antisense	CDS	95
LMJ.RY0402.192977_2	LMJ.RY0402.192977	antisense	CDS	95
LMJ.RY0402.196777_1	LMJ.RY0402.196777	sense	CDS	95
LMJ.RY0402.196777_2	LMJ.RY0402.196777	sense	CDS	95
LMJ.RY0402.219982_1	LMJ.RY0402.219982	sense	3'UTR	73
LMJ.RY0402.237685_2	LMJ.RY0402.237685	sense	CDS	73

Gene Annotations

PFAM:	PF02463
PANTHER:	PTHR19306:SF1 PTHR19306
KEGG_ec:
KEGG_orthology:
KOG:	KOG0979
Gene ontology terms::	GO:0005524, GO:0005694
Best arabidopsis TAIR name:	AT5G15920.1
Best arabidopsis TAIR symbol:	SMC5
Best arabidopsis TAIR defline:	structural maintenance of chromosomes 5
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

LAT003D02, screen 1 of 1 ( 73% confidence (FDR = 0.27))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.

Gene: Cre10.g440200 (Genome version: v5.3)