Insertion junction: CLIP2.045659_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.045659
Chromosome:chromosome 10
Location:2962246
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g440200 SMC5B (1 of 2) PTHR19306:SF1 - STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5; Structural Maintenance of Chromosomes protein outside_mRNA
Cre10.g440250 PGM19 Putative phosphoglycerate mutase; (1 of 1) 3.1.3.80 - 2,3-bisphosphoglycerate 3-phosphatase / 2,3-BPG 3-phosphatase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGACACCCCCCTGTGCGCTATGGAAGCCGAGATAGGGGAGGCTTCGGA
Internal bar code:CATGTTATAGCGCTGGTTTTCC

Confirmation - LEAP-Seq

LEAP-Seq distance:1173
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CATCCAGACACCACACACGA
Suggested primer 2:CTCTCATGTGCCATTTCGCG