Insertion junction: CLIP2.012658_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.012658
Chromosome:chromosome 3
Location:3967833
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g171350 SEC61A SEC61-alpha subunit of ER-translocon; (1 of 1) K10956 - protein transport protein SEC61 subunit alpha (SEC61A) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCGCACCCCGCCAAGTTGGTCGTCCCCGACATCAAGGAAACAAACGCAC
Internal bar code:AACGAGATCGACTGATCTCCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:5271
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:AACATGCCCATCATCCTGCA
Suggested primer 2:CGCCTGCCATAGCTACATCA