Insertion junction: CLIP2.012784_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.012784
Chromosome:chromosome 10
Location:2633626
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g437150 PPR6,CYCR5 PentatricoPeptide Repeat protein 6; (1 of 2) K17710 - pentatricopeptide repeat domain-containing protein 1 (PTCD1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGAGCAGGTGACGCTGCTGACGGGCTTCGGCACGGACGTGATGGTCGCC
Internal bar code:CTGAAGATTGTCATCAGACGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1506
LEAP-Seq percent confirming:96.1538
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:GTTTCGTTCAACCAGCACCC
Suggested primer 2:AGTACAGCACTGTGGCCTTC