| Common name: | PPR6,CYCR5 |
| Defline: | PentatricoPeptide Repeat protein 6; (1 of 2) K17710 - pentatricopeptide repeat domain-containing protein 1 (PTCD1) |
| Description: | PentatricoPeptide Repeat protein with a SmR-like and a cyclin domain |
| Synonyms: | Cre10.g437150.t1.1,CYCR5,g10773.t1 |
| Chromosome: | chromosome 10 |
We did not create a plasmid for this gene.
We did not determine any protein-protein interactions for this gene.
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.008690_1 | CLIP2.008690 | CDS | 80 | 6.1 |
| CLIP2.009388_3 | CLIP2.009388 | 3'UTR | 63 | 6.1 |
| CLIP2.010220_1 | CLIP2.010220 | CDS | 80 | 6.1 |
| CLIP2.010220_2 | CLIP2.010220 | CDS | 80 | 6.1 |
| CLIP2.012503_1 | CLIP2.012503 | intron | 80 | 6.1 |
| CLIP2.012503_2 | CLIP2.012503 | intron | 80 | 6.1 |
| CLIP2.012784_1 | CLIP2.012784 | CDS | 80 | 6.1 |
| CLIP2.012784_2 | CLIP2.012784 | CDS | 80 | 6.1 |
| CLIP2.033150_1 | CLIP2.033150 | intron | 80 | 6.1 |
| CLIP2.033150_2 | CLIP2.033150 | intron | 80 | 6.1 |
| CLIP2.059390_1 | CLIP2.059390 | 5'UTR | 80 | 6.1 |
| LMJ.RY0402.081060_1 | LMJ.RY0402.081060 | CDS | 73 | 5.5 |
| LMJ.RY0402.127874_1 | LMJ.RY0402.127874 | CDS | 95 | 5.5 |
| LMJ.RY0402.127874_2 | LMJ.RY0402.127874 | CDS | 95 | 5.5 |
| LMJ.RY0402.130597_1 | LMJ.RY0402.130597 | CDS | 73 | 5.5 |
| LMJ.RY0402.153601_1 | LMJ.RY0402.153601 | CDS | 58 | 5.5 |
| LMJ.RY0402.214478_1 | LMJ.RY0402.214478 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.214478_2 | LMJ.RY0402.214478 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.214478_3 | LMJ.RY0402.214478 | CDS | 95 | 5.5 |
| LMJ.RY0402.230226_1 | LMJ.RY0402.230226 | CDS | 73 | 5.5 |
| PFAM: | PF00134, PF13041 |
| PANTHER: | PTHR24015 |
| KEGG_ec: | |
| KEGG_orthology: | K17710 |
| KOG: | KOG0653 |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | AT1G80270 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | PENTATRICOPEPTIDE REPEAT 596 |
| Phytozome Locus Page |
Mutants in this gene exhibit a phenotype under the following conditions:
| Paromomycin, screen 1 of 6 ( 82% confidence (FDR = 0.18)) |
| Paromomycin, screen 3 of 6 ( 79% confidence (FDR = 0.21)) |
| Predator, screen 7 of 11 ( 96% confidence (FDR = 0.039)) |
Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.
If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.