Insertion junction: CLIP2.013396_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.013396
Chromosome:chromosome 3
Location:6755279
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g196450 (1 of 1) K15178 - RNA polymerase-associated protein RTF1 (RTF1) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGCCACCTAACCGGCTACCCCCACAGCCAGGGCAAACACTTCCCTTATC
Internal bar code:CTGTTGCGTTGTACACTATGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2007
LEAP-Seq percent confirming:65.625
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:CTGACGACCTAGACGATGCC
Suggested primer 2:TCTGCCTCCTTAGCCTTTGC