Gene: Cre03.g196450
Overview
| Common name: | |
| Defline: | (1 of 1) K15178 - RNA polymerase-associated protein RTF1 (RTF1) |
| Description: | |
| Synonyms: | Cre03.g196450.t1.1,g4069.t1 |
| Chromosome: | chromosome 3 |
Protein Localization
A plasmid for expressing Cre03.g196450 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre03.g196450-Venus-3xFLAG
Imaged strain: CSI_LW06H2
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
nucleus/nucleoplasm
nucleus/nucleolus
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.013396_1 | CLIP2.013396 | intron | 80 | 6.1 |
| CLIP2.013396_2 | CLIP2.013396 | intron | 80 | 6.1 |
| CLIP2.033714_1 | CLIP2.033714 | intron | 80 | 6.1 |
| CLIP2.033714_2 | CLIP2.033714 | intron | 80 | 6.1 |
| CLIP2.039023_1 | CLIP2.039023 | CDS | 80 | 6.1 |
| CLIP2.039023_2 | CLIP2.039023 | CDS | 80 | 6.1 |
| CLIP2.047148_1 | CLIP2.047148 | intron | 80 | 6.1 |
| CLIP2.047148_2 | CLIP2.047148 | intron | 80 | 6.1 |
| CLIP2.062847_1 | CLIP2.062847 | 3'UTR | 80 | 6.1 |
| CLIP2.062847_2 | CLIP2.062847 | 3'UTR | 80 | 6.1 |
| CLIP2.075623_1 | CLIP2.075623 | 3'UTR | 80 | 6.1 |
| CLIP2.076839_1 | CLIP2.076839 | 3'UTR | 80 | 6.1 |
| CLIP2.076839_2 | CLIP2.076839 | 3'UTR | 80 | 6.1 |
| CLIP2.077685_1 | CLIP2.077685 | 3'UTR | 80 | 6.1 |
| CLIP2.078779_1 | CLIP2.078779 | 3'UTR | 80 | 6.1 |
| LMJ.RY0402.181223_1 | LMJ.RY0402.181223 | CDS | 73 | 5.5 |
| LMJ.RY0402.232194_1 | LMJ.RY0402.232194 | intron | 73 | 5.5 |
| LMJ.RY0402.244860_1 | LMJ.RY0402.244860 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.244860_2 | LMJ.RY0402.244860 | 3'UTR | 95 | 5.5 |
Gene Annotations
| PFAM: | PF03126 |
| PANTHER: | PTHR13115 PTHR13115:SF8 |
| KEGG_ec: | |
| KEGG_orthology: | K15178 |
| KOG: | KOG2402 |
| Gene ontology terms:: | GO:0003677, GO:0005634, GO:0006352, GO:0006368, GO:0016570, GO:0016593 |
| Best arabidopsis TAIR name: | AT1G61040 |
| Best arabidopsis TAIR symbol: | VIP5 |
| Best arabidopsis TAIR defline: | plus-3 domain-containing protein |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.