Insertion junction: CLIP2.013523_3

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.013523
Chromosome:chromosome 11
Location:1017832
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467665 (1 of 1) IPR002909//IPR006626//IPR011050//IPR014756//IPR019316 - IPT domain // Parallel beta-helix repeat // Pectin lyase fold/virulence factor // Immunoglobulin E-set // G8 domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGCCTCCGGCTCCGGCTCCGGCTCCAGCGCTTGAGGCCGCGCCCGCTTG
Internal bar code:ATTGTGTGTCCCGCTCCACTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:6077
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:ACGTCCCAGACAGAAGCAAG
Suggested primer 2:AGCTGGACTTCCTACCGCTA