Insertion junction: CLIP2.014605_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.014605
Chromosome:chromosome 6
Location:1396759
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g259600 VPS53 Subunit of GARP complex; (1 of 1) PTHR12820//PTHR12820:SF0 - VACUOLAR SORTING PROTEIN 53 // VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 53 HOMOLOG 5'UTR
Cre06.g259650 MPA7 Metallophosphoesterase/metallo-dependent phosphatase; (1 of 1) PTHR10161 - TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAAATGCCGAGGCCAACGATGAGTTTCTTTCGCTTGAGTTGTAGTTCAT
Internal bar code:GAACTACTTTAGAGGGTAATGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1965
LEAP-Seq percent confirming:97.4359
LEAP-Seq n confirming:38
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:AGCAACGGTACACTGCGTTA
Suggested primer 2:GTCCTTGACGCAAAGGGGTA