Insertion junction: CLIP2.015038_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.015038
Chromosome:chromosome 16
Location:3296454
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g666334 RFS1 (1 of 1) 2.4.1.82 - Galactinol--sucrose galactosyltransferase / Raffinose synthase; putative raffinose synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAGCTCACAGGCATCGTGATTGCAATGTAAGATTCTCCTCCTGATAAGC
Internal bar code:GAGCCTTTTGAGATTAATATTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2157
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:AGCGTGTTTGGAACGTGTTG
Suggested primer 2:ATGCAAGCAATGACCGATGC