Insertion junction: CLIP2.015846_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.015846
Chromosome:chromosome 16
Location:2684209
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g661650 (1 of 6) IPR001471//IPR016177 - AP2/ERF domain // DNA-binding domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCCATGGACCTGTACGCGCATCCCCCGCCCTACGGCGCGATCCCACCGT
Internal bar code:GGAGTGAGATGTGAGTATCGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1100
LEAP-Seq percent confirming:63.6364
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:TCGTCCAATGCCACTACCAC
Suggested primer 2:TGTGTCAAGGTATGCCGCTT