Insertion junction: CLIP2.016680_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.016680
Chromosome:chromosome 5
Location:3358428
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g232751 (1 of 2) PTHR23518:SF2 - MULTIDRUG RESISTANCE PROTEIN MDTH intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCATGAATGTACCCCCCCCCCCCGCCTTCACCACTGCCTCACGGACTCG
Internal bar code:TTCCTAGTAAGAGTTCAGTGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:707
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:AGCAGACTCTTGGGCATCAC
Suggested primer 2:ACTCCAGTGCCTGTGTTACG