Insertion junction: CLIP2.019134_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.019134
Chromosome:chromosome 11
Location:2427076
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g095121 PUS9 (1 of 1) PTHR21600//PTHR21600:SF11 - RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B // PSEUDOURIDINE SYNTHASE FAMILY PROTEIN; RNA pseudouridine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCTGCCCCGTGTCCCCATGTGACCAGTCGTGCCCGCCTCCTCCCTTCCC
Internal bar code:TGACGGCGGGACCGGGTTTGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:677
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:AGGACAGAGGGACACGATGA
Suggested primer 2:GCGGGTGTTAGAGATGGAGG