Insertion junction: CLIP2.019406_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.019406
Chromosome:chromosome 6
Location:2607593
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g269950 CDC48,EZY21,NSG14 (1 of 1) K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48); Cell Division Cycle protein 48 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGAGACACTAGTATACTTGCTCCTCCTCCCACAGCCGCCCGCCTCGTCT
Internal bar code:TTTGTATCTTTCAGCCAAGTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1090
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:GCACCCCGAGAAGTTTGAGA
Suggested primer 2:CTGCTGTCCATGCCCAACTA